Biotechnology · Workshop

Metagenomics Using Galaxy Platform

Metagenomics, data format, analysis workflow, Galaxy platform, retrieving data, amplicon data, importation, quality control, sequence alignment, taxonomic extraction, visualization, shotgun metagenomics, data upload, functional information, Windows PC, internet access, Galaxy account, microbiome, bioinformatics.

ModeVirtual (Google Meet)
LevelModerate
Fee₹1,399

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About Workshop

Participants will cover fundamentals, data formats, and workflows, progressing to practical exercises on the Galaxy platform. Sessions include amplicon data analysis and shotgun metagenomics, culminating in a holistic understanding of microbial ecosystems. Requirements: Windows PC, internet access, and a Galaxy platform account. Elevate your metagenomics proficiency with hands-on experience.

Aim

The aim of the Metagenomics Analysis Workshop is to provide participants with a comprehensive understanding of metagenomics principles, data formats, and analysis workflows. Through practical exercises on the Galaxy platform, attendees will gain proficiency in importing, analyzing, and visualizing metagenomics data. By the end of the workshop, participants will be equipped with the skills necessary to explore and interpret complex microbial communities using advanced computational tools, ultimately advancing their expertise in metagenomics analysis.

What Participants Will Learn

Metagenomics Principles Understanding: Provide participants with a foundational understanding of metagenomics principles and their significance in microbiome research.
Data Formats and Workflows Familiarization: Familiarize attendees with common data formats and analysis workflows used in metagenomics research, enabling them to navigate through complex datasets effectively.
Galaxy Platform Introduction: Introduce participants to the Galaxy platform as a versatile tool for metagenomics data analysis, covering its functionalities and applications in research.
Effective Data Retrieval and Preprocessing: Equip participants with the skills necessary to retrieve and preprocess metagenomics data efficiently, ensuring data quality and integrity.
Amplicon Data Analysis Hands-On Session: Provide practical guidance on amplicon data analysis, including data importation, quality control, sequence alignment, taxonomic information extraction, and visualization techniques.
Shotgun Metagenomics Data Analysis Workshop: Guide participants through shotgun metagenomics data analysis, covering data upload, taxonomic and functional information extraction, and interpretation.
Interactive Workshop and Exercises: Foster hands-on experience and skills development through interactive workshop and exercises, enabling participants to apply theoretical knowledge into practice.
Troubleshooting Common Challenges: Enable participants to troubleshoot common challenges encountered during metagenomics data analysis, empowering them to overcome obstacles effectively.
Facilitation of Collaboration and Knowledge Sharing: Promote collaboration and knowledge sharing among participants from diverse backgrounds and disciplines, encouraging networking and mutual learning.
Encouragement for Research Advancement: Inspire participants to apply their newfound knowledge and skills to advance research and innovation in the field of metagenomics, fostering contributions to scientific advancement.

Structure

Day 1: Introduction

Introduction to Metagenomics
Understanding Metagenomics Data format and analysis workflow
Introduction to Galaxy platform
Retrieving metagenomics data

Day 2: Amplicon Data

Importing the data
Quality Control
Sequence Alignment
Extraction of taxonomic information
Visualization

Day 3: Shotgun Metagenomics Data

Data upload
Extraction of taxonomic information
Extraction of functional information

Requirements: Windows PC with good internet and Account in galaxy platform : https://usegalaxy.org/

Outcomes

Enhanced Understanding: Develop a comprehensive understanding of metagenomics principles, data formats, and analysis workflows.
Proficiency in Galaxy Platform: Gain proficiency in navigating the Galaxy platform for metagenomics data analysis and visualization.
Data Retrieval Skills: Acquire skills to effectively retrieve metagenomics data from various sources for analysis.
Quality Control Mastery: Learn to implement robust quality control measures to ensure the reliability and accuracy of sequencing data.
Sequence Alignment Expertise: Master sequence alignment techniques for aligning sequencing reads to reference genomes or databases.
Taxonomic and Functional Information Extraction: Gain proficiency in extracting taxonomic and functional information from metagenomics datasets to characterize microbial communities and identify biological functions.
Visualization Proficiency: Develop skills in visualizing and interpreting metagenomics data effectively, facilitating clear communication of findings.

Metagenomics Using Galaxy Platform

About Workshop

Aim

What Participants Will Learn

Structure

Important Dates

Workshop Dates

What You Will Gain

Outcomes

Who Should Attend

DR. S THAKUR

Assistant Professor